Microbial 'omics

Table of Contents

Anvi’o in a nutshell

Anvi’o is an open-source, community-driven analysis and visualization platform for ‘omics data.

It brings together many aspects of today’s cutting-edge genomic, metagenomic, metatranscriptomic, pangenomic, and phylogenomic analysis practices to address a wide array of needs.

Questions? Concerns? Find us on

Tutorials

See the “tutorials” pull-down menu to learn what you can do with anvi’o.

Vignette

See all programs in anvi’o here: http://merenlab.org/software/anvio/vignette/

Others on anvi’o

Visit this post to read user testimonials, or share your anvi’o experience with others.

Citation

Eren AM, Esen ÖC, Quince C, Vineis JH, Morrison HG, Sogin ML, Delmont TO. (2015) Anvi’o: an advanced analysis and visualization platform for ‘omics data. PeerJ 3:e1319

Please consider also citing the following paper if you are using the pangenomics / metapangenomics workflow:

Delmont TO and Eren AM. (2018) Linking pangenomes and metagenomes: the Prochlorococcus metapangenome. PeerJ 6:e4320

Authors

Full list of authors and contributors can be found here.

All posts anvi’o

Anvi'o events (Thu, Aug 18, 2016)

A resource to find out whether an anvi'o event is coming to a location near you.

Installing anvi'o (Sun, Jun 26, 2016)

Instructions to install the v2 branch of the platform.

Binning without mapping (Mon, Jun 06, 2016)

So you have an assembly, or a draft genome, or a MAG, but no metagenomic short reads? That's OK.