Microbial 'omics


Brought to you by

collection-txt [artifact]

Table of Contents

TXT

A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use..

Back to the main page of anvi’o programs and artifacts.

Provided by

anvi-export-collection anvi-script-merge-collections

Required or used by

anvi-import-collection anvi-script-get-coverage-from-bam anvi-script-merge-collections

Description

This file describes the contents of a collection in a readable format. This is used for taking collections in and out of Anvi’o, or transferring them between Anvi’o projects.

This is a tab-delimited file that contains two columns. The first lists all of the contigs contained within the bins in this collection. The second lists the associated bin that that contig is placed in. For examples, check out this page or below.

contig_1 bin_1 contig_2 bin_1 contig_3 bin_1 contig_4 bin_2 contig_5 bin_3 contig_6 bin_3

You can also list splits instead of contigs in the left column, as seen here.

Edit this file to update this information.