A TXT-type anvi’o artifact. This artifact is typically provided by the user for anvi’o to import into its databases, process, and/or use.
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Most likely provided by the user.
Required or used by
anvi-compute-genome-similarity anvi-dereplicate-genomes anvi-estimate-genome-completeness anvi-estimate-metabolism anvi-gen-genomes-storage anvi-get-sequences-for-hmm-hits anvi-script-gen-hmm-hits-matrix-across-genomes
An external genome is anything you have in a FASTA file format (i.e., a genome you have downloaded from NCBI, or obtained through any other way) that was converted into a contigs-db.
The external genomes file format enables anvi’o to work with one or more external genomes. A TAB-delimited external genomes file will be composed of the following two columns:
Please make sure names in the
name column does not include any special characters (underscore is fine). It is also a good idea to keep these names short and descriptive as they will appear in various figures in downstream analyses.
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