Microbial 'omics


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genes-stats [artifact]

Table of Contents

STATS

A STATS-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-script-gen_stats_for_single_copy_genes.py

Required or used by

Description

This file contains information about your genes.

It is a tab-delimited text file where each row represents a specific gene and each column provides different information.

As of now, the only program that returns data in this format is anvi-script-gen_stats_for_single_copy_genes.py, which returns this information for the single copy core genes in your contigs-db.

From left to right, these tell you

  • The source for this gene (ex Protista_83)
  • The name of the contig that this gene is a part of
  • The gene name
  • The e-value (of the HMM hit that was used to find this gene)

Edit this file to update this information.