Microbial 'omics


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genome-taxonomy-txt [artifact]

Table of Contents

TXT

A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use..

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anvi-estimate-scg-taxonomy

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Description

This is the output tables that are displayed when you run anvi-estimate-scg-taxonomy, but formatted as a tab-delimited text file.

To get this output, just provide the -o or the -O flag when running anvi-estimate-scg-taxonomy.

These contain the exact same information as is normally displayed in the terminal, just in a separate file that is easier to share or include as supplemental data. To see an explination of the data within this file, you can look at the page for genome-taxonomy.

Edit this file to update this information.