Microbial 'omics


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misc-data-items [artifact]

Table of Contents

CONCEPT

A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

Back to the main page of anvi’o programs and artifacts.

Provided by

anvi-get-sequences-for-gene-clusters anvi-import-misc-data

Required or used by

anvi-delete-misc-data anvi-export-misc-data

Description

This is the section of your profile-db/pan-db that contains custom additional information about each of the items in the central section of the interactive interface. When you run anvi-interactive, this data will appear as additional concentric circles.

As also defined in this blog post, this type of data will include information about each item (whether that’s a contig, gene, or bin). This data can be either numerical or categorical and will be imported by the user through the command anvi-import-misc-data.

To change the order that the items are displayed in, take a look at anvi-import-items-order.

For example, this information could describe whether or not each bin reached a certain completion threshold, the e-score of the function annotation on each gene, or different categories that the total length of a contig could fall into (1-1.5 kb, 1.5-2 kb, 2-2.5 kb, and so on).

Edit this file to update this information.