Microbial 'omics


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misc-data-nucleotides [artifact]

Table of Contents

CONCEPT

A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

Back to the main page of anvi’o programs and artifacts.

Provided by

anvi-import-misc-data

Required or used by

anvi-delete-misc-data anvi-export-misc-data

Description

This is a section of your contigs-db that contains custom additional information about specific nucleotides.

Take a look at this blogpost for potential uses in the InteracDome (which will likely be added to anvi’o in v7) and the motivation behind this program.

Similarly to other types of miscellaneous data (like misc-data-items), this information can be populated into a contigs-db with anvi-import-misc-data and can be either numerical or categorical.

For example, this information could describe specific nucleotides that are known to be SNVs from another experiment, various key nucleotides for binding to ligands, or positions known to have other modifications (such as m1A or s4U).

Edit this file to update this information.