Microbial 'omics


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anvi-export-splits-taxonomy [program]

Export taxonomy for splits found in an anvi'o contigs database.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

splits-taxonomy-txt

Requires or uses

contigs-db

Usage

This program exports the taxonomy hits for the splits contained in a contigs-db, outputting them in a splits-taxonomy-txt.

To do this, anvi’o examines all of the annotated genes within your splits and returns the taxon ID with the most genes associated with it. For example, a split with 3 genes identified as E. coli, 2 genes identified as Staphylococcus aureus, and 1 as Streptococcus pneumoniae would be annotated as E. coli.

To run this program, just provide a contigs-db:

anvi-export-splits-taxonomy -c contigs-db \ -o PATH/TO/splits-taxonomy-txt

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.