Microbial 'omics


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anvi-gen-genomes-storage [program]

Create a genome storage from internal and/or external genomes for a pangenome analysis..

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Table of Contents

Provides

genomes-storage-db

Requires or uses

external-genomes internal-genomes

Usage

From external genomes

anvi-gen-genomes-storage -e external-genomes \ -o genomes-storage-db

From internal genomes

anvi-gen-genomes-storage -i internal-genomes \ -o genomes-storage-db

From internal and external genomes

anvi-gen-genomes-storage -i internal-genomes \ -e external-genomes \ -o genomes-storage-db

See also anvi-pan-genome, which computes a pangenome from a genomes-storage-db.

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Additional Resources

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