Microbial 'omics


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anvi-gen-variability-profile [program]

Generate a table that comprehensively summarizes the variability of nucleotide, codon, or amino acid positions. We call these single nucleotide variants (SNVs), single codon variants (SCVs), and single amino acid variants (SAAVs), respectively. Learn more here: http://merenlab.org/2015/07/20/analyzing-variability/.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

variability-profile-txt

Requires or uses

contigs-db profile-db structure-db bin variability-profile

Usage

No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-gen-variability-profile.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.