Microbial 'omics


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anvi-get-short-reads-mapping-to-a-gene [program]

Recover short reads from BAM files that were mapped to genes you are interested in. It is possible to work with a single gene call, or a bunch of them. Similarly, you can get short reads from a single BAM file, or from many of them.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

short-reads-fasta

Requires or uses

contigs-db bam-file

Usage

No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-get-short-reads-mapping-to-a-gene.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.