Microbial 'omics


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anvi-import-taxonomy-for-genes [program]

Import gene-level taxonomy into an anvi'o contigs database.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

gene-taxonomy

Requires or uses

contigs-db gene-taxonomy-txt

Usage

This program uses a gene-taxonomy-txt to populate the taxonomic information for the genes in a contigs-db.

Once finished, your gene taxonomy will appear as an additional layer if you open the contigs-db and an associated profile-db in anvi-interactive.

There is an entire blogpost about different ways to do this here. It outlines how to get your sequences using anvi-get-sequences-for-gene-calls than use either Kaiju or Centrifuge to get the taxonomy information for your genes. Finally, you bring that information back into anvi’o using this program.

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.