Microbial 'omics


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anvi-inspect [program]

Start an anvi'o inspect interactive interface.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

interactive

Requires or uses

profile-db contigs-db bin

Usage

This lets you inspect a single split across your samples. This interface can also be opened from the anvi-interactive interface by asking for details about a specific split.

From this view, you can clearly see the coverage and detection across your split, all SNVs, and the genes identified within your split and their functional annotations. You can also easily compare all of this data across all of the samples that this split is present in.

To run this program, just provide a profile-db and contigs-db pair and a single split name to inspect.

anvi-inspect -p profile-db \ -c contigs-db \ --split-name Day17a_QCcontig9_split_00003

You can also choose to hide SNVs marked as outliers or configure the server in various ways.

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.