Microbial 'omics

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anvi-run-hmms [program]

This program deals with populating tables that store HMM hits in an anvi'o contigs database..

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents



Requires or uses

contigs-db hmm-source


Stores hmm-hits for a given hmm-source in a contigs-db.

One of the programs that users commonly run on newly generated contigs-db, along with anvi-scan-trnas, anvi-run-ncbi-cogs, anvi-run-scg-taxonomy, and so on.

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Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.