Microbial 'omics


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anvi-run-ncbi-cogs [program]

Run NCBI's COGs to associate genes in an anvi'o contigs database with functions. COGs database was been designed as an attempt to classify proteins from completely sequenced genomes on the basis of the orthology concept. It is no longer actively developed, however, it is still very effective for daily needs. You may want to consider Pfams or the eggNOG database for more comprehensive functional insights..

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

functions

Requires or uses

contigs-db cogs-data

Usage

No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-run-ncbi-cogs.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.