Microbial 'omics


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anvi-run-scg-taxonomy [program]

The purpose of this program is to affiliate single-copy core genes in an anvi'o contigs database with taxonomic names. A properly setup local SCG taxonomy database is required for this program to perform properly. After its successful run, anvi-estimate-scg-taxonomy will be useful to estimate taxonomy at genome-, collection-, or metagenome-level)..

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

scgs-taxonomy

Requires or uses

contigs-db scgs-taxonomy-db

Usage

No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-run-scg-taxonomy.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.