A simple script to generate info from search tables, given a contigs-db.
Requires or uses
This program provides information about each of the single copy core genes in your contigs-db.
anvi-script-gen_stats_for_single_copy_core_genes.py -c contigs-db
The console output will tell you the total number of contigs, splits, and nucleotides in your contigs-db, while the text output will tell you the source, name, and e-value of each single-copy core gene.
You can get information from only single-copy core genes from a specific source. To see what sources are availible in your contigs-db, run
anvi-script-gen_stats_for_single_copy_core_genes.py -c contigs-db \ --list-sources
Edit this file to update this information.
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.