Microbial 'omics

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anvi-script-process-genbank-metadata [program]

This script takes the 'metadata' output of the program ncbi-genome-download (see https://github.com/kblin/ncbi-genome-download for details), and processes each GenBank file found in the metadata file to generate a FASTA file, as well as genes and functions files for each entry. Plus, it autmatically generates a FASTA TXT file descriptor for anvi'o snakemake workfloes. So it is a multi-talented program like that.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents


contigs-fasta functions-txt external-gene-calls

Requires or uses


No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-script-process-genbank-metadata.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.