Microbial 'omics


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anvi-search-functions [program]

Search functions in an anvi'o contigs database or genomes storage. Basically, this program searches for one or more search terms you define in functional annotations of genes in an anvi'o contigs database, and generates multiple reports. The simpler report (which also is the default one) simply tells you which contigs contain genes with functions matching to serach terms you used. This file is only useful to quickly highlight matching contigs in the interface by providing it to the anvi-interactive with the --additional-layer parameter. You can also request a much more comprehensive report, which gives you anything you might need to know, including the matching gene caller id, functional annotation source, and full function name for each hit and serach term..

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Provides

functions-txt

Requires or uses

contigs-db genomes-storage-db

Usage

No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-search-functions.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.