The purpose of this program is to download necessary information from GTDB (https://gtdb.ecogenomic.org/), and set it up in such a way that your anvi'o installation is able to assign taxonomy to single-copy core genes using
anvi-run-scg-taxonomy and estimate taxonomy for genomes or metagenomes using
Requires or uses
No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-setup-scg-taxonomy.md”. For a template, you can use the markdown file for
anvi-gen-contigs-database. THANK YOU!
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.