Microbial 'omics

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anvi-split [program]

Split an anvi'o pan or profile database into smaller, self-contained pieces. This is usually great when you want to share a subset of an anvi'o project. You give this guy your databases, and a collection id, and it gives you back directories of individual projects for each bin that can be treated as self-contained smaller anvi'o projects. We know you don't read this far into these help menus, but please remember: you will either need to provide a profile & contigs database pair, or a pan & genomes storage pair. The rest will be taken care of. Magic..

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents



Requires or uses

profile-db contigs-db collection


No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-split.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.