Microbial 'omics

Brought to you by

anvi-summarize [program]

Summarizer for anvi'o pan or profile db's. Essentially, this program takes a collection id along with either a profile database and a contigs database or a pan database and a genomes storage and generates a static HTML output for what is described in a given collection. The output directory will contain almost everything any downstream analysis may need, and can be displayed using a browser without the need for an anvi'o installation. For this reason alone, reporting summary outputs as supplementary data with publications is a great idea for transparency and reproducibility..

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents



Requires or uses

profile-db contigs-db collection pan-db genomes-storage-db


No one has described the usage of this program :/ If you would like to contribute, please see previous examples here, and feel free to add a Markdown formatted file in that directory named “anvi-summarize.md”. For a template, you can use the markdown file for anvi-gen-contigs-database. THANK YOU!

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.