Microbial 'omics


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seeds-non-specific-txt [artifact]

Table of Contents

TXT

A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

There are no anvi’o tools that generate this artifact, which means it is most likely provided to the anvi’o ecosystem by the user.

Required or used by

There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.

Description

This tabular file contains data on the nonspecific coverages of tRNA-seq seeds.

Nonspecific coverage represents reads that are not unique to a single tRNA seed. See the trnaseq-profile-db artifact for a fuller explanation of specific versus nonspecific coverage. The rows and columns of this table are identical to seeds-specific-txt except for the type of coverage data reported in each.

This file is produced by anvi-tabulate-trnaseq. The artifact for that program describes this and related tables in detail.

This tab-delimited file can be easily manipulated by the user. It is optional input for anvi-plot-trnaseq.

Example

The seeds shown in this table are also shown in the seeds-specific-txt example. Modifications from these seeds are shown in the modifications-txt example.

gene_callers_id contig_name anticodon aa domain phylum class order family genus species taxon_percent_id sample_name mean_coverage relative_mean_coverage relative_discriminator_coverage 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 17a 18 19 20 20a 20b 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44.01 44.02 44.03 44.04 44.05 44.06 44.07 44.08 44.09 44.1 44.11 44.12 44.13 44.14 44.15 44.16 44.17 44.18 44.19 44.2 44.21 44.22 44.23 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 DB_01 100372.4   14497 14608 14815 14882 14985 15828 15854 15895 16410 16565 16840 16960 16975 16990 17490 18529 19087   19683 21763 24353     24699 25182 29097 30476 30609 30612 30491 30125 29973 29506 29417 26259 31169 145828 153750 155936 156187 156518 157233 157226 157178 157429 158124 159941 164453 167924 170595 170567                                     170572 170577 170547 170541 170326 169581 169509 169509 169497 169497 169494 169491 168727 168721 168719 168719 168719 168719 168719 168719 168489 168485 168480 167688 155628    
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 DB_03 203816.6   10498 10599 11105 11217 11255 11270 11350 11444 12349 12539 13028 13331 13337 13390 14325 15079 15603   15769 18168 21167     23927 24910 27041 28271 28395 28604 28612 28749 29242 30775 32254 33570 44299 319895 335328 337653 341382 342776 344543 345794 345762 345808 346281 347647 354052 360294 361948 361948                                     362317 362317 362303 362303 362226 362056 362056 362056 362056 362050 362046 362044 362044 362044 362044 362044 362032 362027 362027 362027 361349 361349 361349 360094 345770    
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 DB_05 26137.9   5111 5184 5259 5704 5979 5979 5979 6011 6550 6587 6587 6611 6611 6611 6936 7087 7090   7170 8243 9158     9488 9868 12268 12323 12866 12616 12506 12640 12630 12838 12292 11336 11621 36476 37479 38030 38892 39018 39018 39084 39068 39272 39272 39272 40666 41573 41879 41873                                     42019 42019 42015 42015 41996 41873 41857 41695 41689 41689 41689 41689 41683 41683 41683 41569 41569 40839 40839 40839 40839 40538 40495 40464 36174    
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 DB_07 182536.6   16048 16134 16358 16639 16664 16679 16679 16757 17351 17494 17494 17547 17613 17737 18346 18771 18776   19172 20831 21986     22549 22933 25352 26246 26370 25534 25798 25385 25277 25529 25758 25079 33202 289207 300224 303731 306231 306774 307692 307695 307604 307604 307828 308578 314195 317240 321017 321023                                     321634 321634 321615 321615 321596 321066 321066 321066 321066 321066 321066 321066 321066 321066 321066 321066 321066 321066 321059 321059 320379 320373 320363 320230 303028    
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 DB_01 3923.1   32 32 32 32 32 32 32 32 32 32 33 33 33 33 33 33 33   33 50 79 82   82 82 82 82 82 82 82 90 90 90 96 109 118 117 125 163 320 7564 7948 7970 7991 7991 7991 8014 8014 8016 8041 8041                                     8041 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8046 8022 8022 8022 8021 7961 7955 7213    
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 DB_03 8502   27 27 27 29 29 31 31 43 49 59 59 59 59 59 59 59 59   59 60 65 65   65 65 65 65 65 65 65 72 72 78 78 92 116 140 173 236 679 16238 17144 17344 17428 17428 17452 17482 17482 17482 17482 17482                                     17482 17482 17482 17482 17482 17482 17480 17480 17480 17480 17480 17480 17480 17480 17480 17480 17480 17480 17480 17480 17480 17480 17411 17320 16198    
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 DB_05 1254.6   0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0   0 4 18 18   18 18 18 18 26 26 26 32 32 32 32 40 45 45 60 62 89 2379 2492 2502 2562 2594 2604 2604 2604 2604 2604 2604                                     2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2604 2557 2557 2557 2557 2446 2426 2058    
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 DB_07 4217.8   60 60 60 60 60 60 60 64 72 78 78 78 78 78 78 78 78   78 90 107 107   107 113 113 113 113 119 119 117 117 117 120 120 132 140 172 212 410 7980 8475 8539 8553 8584 8594 8594 8594 8594 8599 8599                                     8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8599 8546 8546 8124    

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