Microbial 'omics

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anvi-script-checkm-tree-to-interactive [program]

A helper script to convert CheckM trees into anvio interactive with taxonomy information.

🔙 To the main page of anvi’o programs and artifacts.

Özcan C. Esen

Usage

A helper script to process CheckM tree output to generate files compatible with anvi-interactive.

An example use:

anvi-script-checkm-tree-to-interactive -t CheckM_concatenated.tree \ -o OUTPUT_PATH cd OUTPUT_PATH/ anvi-interactive -p PROFILE.db \ -t newick.tree \ -d view_data.txt \ --manual

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Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.