Microbial 'omics

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codon-frequencies-txt [artifact]

A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-get-codon-frequencies

Required or used by

There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.

Description

This file contains the frequency of each codon in each gene in your contigs-db.

This is a tab-delimited table where each column represents a codon and each row represents a specific gene. The numbers will either refer to counts of each codon or precent normalizations depending on the parameters with which you ran anvi-get-codon-frequencies.

Example

gene_caller_id  GCA GCC GCG GCT ...
1           0   0   1   2
2           1   0   0   2
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.
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