A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..
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Required or used by
This artifact contains information about the functions of the genes in your contigs-db.
It is a table within your contigs-db that contains functional annotations for your genes.
- NCBI COGs database – see anvi-run-ncbi-cogs for instructions
- EBI’s Pfam database – see anvi-run-pfams for instructions
- The KOfamKOALA database – see anvi-run-kegg-kofams for instructions. Functions specifically from the KOfam database are used to run anvi-estimate-metabolism and are also called kegg-functions.
You can also use EggNOG or InterProScan and then import the results into anvi’o, as described in this blog post.
This is used to run anvi-analyze-synteny.
Edit this file to update this information.