A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..
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Required or used by
There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.
See the page for anvi-script-calculate-pn-ps-ratio for an explanation of the pN/pS ratio
This describes a directory that contains the following three files:
pN_pS_ratio.txt: a matrix of the pN/pS values where each row is a gene and each column is a metagenome.
gene_caller_id ANE_004_05M ANE_004_05M ANE_150_05M ... 1248 0.024404785965479868 0.024404785965479868 0.019650249960943812 1249 0.014399205561072536 0.014399205561072536 0.0 ...
SAAV_counts.txt: a matrix that describes the number of SAAVs for each gene in each metagenome.
gene_caller_id ANE_004_05M ANE_004_05M ANE_150_05M ... 1248 12 11 10 1249 1 1 0 ...
SCV_counts.txt: a matrix that describes the number of SCVs for each gene in each metagenome.
gene_caller_id ANE_004_05M ANE_004_05M ANE_150_05M ... 1248 143 154 148 1249 19 19 14 ...
Edit this file to update this information.