Microbial 'omics

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anvi-export-gene-coverage-and-detection [program]

Export gene coverage and detection data for all genes associated with contigs described in a profile database.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Can provide

coverages-txt detection-txt

Can consume

profile-db contigs-db


This program gives you the coverage and detection data for all of the genes found in your contigs-db, using the short reads data in your profile-db.

anvi-export-gene-coverage-and-detection -c contigs-db \ -p profile-db \ -O MY_DATA

This will give you a coverages-txt and a detection-txt whose file names will begin with MY_DATA

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.