Microbial 'omics

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anvi-export-state [program]

Table of Contents

Export an anvi'o state into a profile database.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Can provide


Can consume

pan-db profile-db state


This program allows you to export a state from a pan-db or profile-db. The output of this is a state-json, which you can import into another anvi’o project with anvi-import-state.

You can run this program on a profile-db or pan-db as follows:

anvi-export-state -s state \ -p profile-db \ -o path/to/output

To list the collections available in this database, you can run

anvi-export-state -p pan-db \ --list-states

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.