Microbial 'omics

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anvi-export-structures [program]

Table of Contents

Export .pdb structure files from a structure database.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Can provide


Can consume



This program exports the structures from a structure-db into the globally understood pdb format (protein-structure-txt), so they may be used for any follow-up analyses taking place outside of anvi’o.

To run, just provide a structure-db and an output path:

anvi-export-structures -s structure-db \ -o path/to/output

You can also provide a list of gene caller IDs, either directly through the parameter --gene-caller-ids or through a file with one gene caller ID per line.

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.