Microbial 'omics


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anvi-script-variability-to-vcf [program]

A script to convert SNV output obtained from anvi-gen-variability-profile to the standard VCF format.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Can provide

vcf

Can consume

variability-profile-txt

Usage

This script converts a variability-profile-txt into vcf (Variant Call Format).

It is very easy to run: just provide the input and output paths as so:

anvi-script-variability-to-vcf -i variability-profile-txt \ -o vcf

Note that to run this, you’ll need to have run anvi-gen-variability-profile with the default nucleotide engine.

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.