anvi-setup-pfams [program]

Table of Contents

• Can provide
• Can consume
• Usage
• Set up Pfams data
• Additional Resources

Download and setup Pfam data from the EBI.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Can provide

pfams-data

Can consume

Usage

This program downloads and organizes a local copy of the data from EBI’s Pfam database for use in function annotation. This program generates a pfams-data artifact, which is required to run the program anvi-run-pfams.

Set up Pfams data

By default, this data is stored at anvio/data/misc/Pfam. To set up this data in a non-default location, run

If you already have a pfams-data artifact and are trying to redownload this data, run

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.