anvi-setup-pfams [program]
Download and setup Pfam data from the EBI.
See program help menu or go back to the main page of anvi’o programs and artifacts.
Table of Contents
Can provide
Can consume
Usage
This program downloads and organizes a local copy of the data from EBI’s Pfam database for use in function annotation. This program generates a pfams-data artifact, which is required to run the program anvi-run-pfams.
Set up Pfams data
anvi-setup-pfams
By default, this data is stored at anvio/data/misc/Pfam
. To set up this data in a non-default location, run
anvi-setup-pfams --pfam-data-dir path/to/location
If you already have a pfams-data artifact and are trying to redownload this data, run
anvi-setup-pfams --reset
Edit this file to update this information.
Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__
tag in this file to see an example.