Microbial 'omics


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kegg-data [artifact]

Table of Contents

DB

A DB-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-setup-kegg-kofams

Required or used by

anvi-display-metabolism anvi-estimate-metabolism anvi-run-kegg-kofams

Description

A directory of data downloaded from the KEGG database resource for use in function annotation and metabolism estimation.

It is created by running the program anvi-setup-kegg-kofams. Not everything from KEGG is included in this directory, only the information relevant to downstream programs. The most critical components of this directory are KOfam HMM profiles and the modules-db which contains information on metabolic pathways as described in the KEGG MODULES resource.

Programs that rely on this data directory include anvi-run-kegg-kofams and anvi-estimate-metabolism.

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