Microbial 'omics


Brought to you by

layer-taxonomy-txt [artifact]

Table of Contents

TXT

A TXT-type anvi’o artifact. This artifact can be generated, used, and/or exported by anvi’o. It can also be provided by the user for anvi’o to import into its databases, process, and/or use.

🔙 To the main page of anvi’o programs and artifacts.

Provided by

There are no anvi’o tools that generate this artifact, which means it is most likely provided to the anvi’o ecosystem by the user.

Required or used by

anvi-import-taxonomy-for-layers

Description

This is a text file containing taxonomy information for your layers (the same information as a layer-taxonomy). You can bring this information into a single-profile-db using anvi-import-taxonomy-for-layers.

This is a tab-delimited text file that is formatted similarly to a gene-taxonomy-txt. The first column describes the names of your layers, and the following columns each correspond to the taxonomy level described in the header. Here is an example:

sample  t_domain    t_phylum    t_class     ...
 c1     Eukaryea    Chordata    Mammalia
 ...

Edit this file to update this information.