Microbial 'omics


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modifications-txt [artifact]

Table of Contents

TXT

A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-tabulate-trnaseq

Required or used by

anvi-plot-trnaseq

Description

This tabular file contains data on predicted modifications in tRNA-seq seeds.

This file is produced by anvi-tabulate-trnaseq. The artifact for that program describes this and related tables in detail.

This tab-delimited file can be easily manipulated by the user. It is required input for anvi-plot-trnaseq.

Example

The modifications shown in this table are from the seeds represented in the seeds-specific-txt and seeds-non-specific-txt example tables.

gene_callers_id contig_name anticodon aa domain phylum class order family genus species taxon_percent_id seed_position ordinal_name ordinal_position canonical_position reference sample_name A C G T
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 19 d_loop_beta_1 22 20 G DB_01 142 589 69411 1315
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 19 d_loop_beta_1 22 20 G DB_03 217 1056 83751 2592
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 19 d_loop_beta_1 22 20 G DB_05 42 212 28784 515
0 c_000000684460_DB_R05_06 TAC Val Bacteria Firmicutes Clostridia Lachnospirales Lachnospiraceae     100 19 d_loop_beta_1 22 20 G DB_07 102 429 45633 977
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 32 anticodon_loop_1 36 32 T DB_01 0 51 14 77
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 32 anticodon_loop_1 36 32 T DB_03 1 274 97 642
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 32 anticodon_loop_1 36 32 T DB_05 0 78 17 137
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 32 anticodon_loop_1 36 32 T DB_07 0 19 18 87
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 37 anticodon_loop_6 41 37 G DB_01 0 1 137 5
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 37 anticodon_loop_6 41 37 G DB_03 5 18 916 64
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 37 anticodon_loop_6 41 37 G DB_05 6 3 222 7
1 c_000000805276_DB_R05_05 ACG Arg Bacteria Firmicutes           98.649 37 anticodon_loop_6 41 37 G DB_07 0 15 104 1

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