Microbial 'omics


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TXT

A TXT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-summarize-blitz

Required or used by

There are no anvi’o tools that use or require this artifact directly, which means it is most likely an end-product for the user.

Description

The output of anvi-summarize-blitz.

anvi-summarize-blitz summarizes read-recruitment statistics for a collection of bins across multiple samples. It produces long format output in which each row contains the (weighted) average statistics of a bin in a sample. Each statistic is summarized in a different column of the file.

Here is an example output file from this program, summarizing detection and mean_coverage_Q2Q3 data (the default statistics) for 3 bins across multiple samples:

unique_id bin_name sample detection mean_coverage_Q2Q3
0 bin_1 sample_1 0.015553023620503776 1.0272713907674214
1 bin_2 sample_1 0.0004871607502275562 0.0
2 bin_3 sample_1 0.0023636043452898497 0.0
3 bin_1 sample_2 0.015767421346662747 1.1101759286484367
4 bin_2 sample_2 0.0004871607502275562 0.0
5 bin_3 sample_2 0.001595914458984989 0.0
[…] […] […] […] […]

The unique_id column is just a unique index for each row. Each column after the sample column contains a different statistic (to learn how to include different or additional statistics in this output, read the anvi-summarize-blitz page.)

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