Microbial 'omics


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trna-taxonomy-db [artifact]

Table of Contents

CONCEPT

A CONCEPT-type anvi’o artifact. This artifact is typically generated, used, and/or exported by anvi’o (and not provided by the user)..

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Provided by

anvi-setup-trna-taxonomy

Required or used by

anvi-run-trna-taxonomy

Description

This artifact represents the GTDB data (from Parks et al. 2018) downloaded by anvi-setup-trna-taxonomy. This information is required to run anvi-run-trna-taxonomy and anvi-estimate-trna-taxonomy.

If the results from this tRNA taxonomy search end up in a paper, make sure to cite Parks et al. 2018 for their information.

By default, it is stored at anvio/data/misc/TRNA-TAXONOMY. This directory contains a few files for each anticodon, each forming a fancy search database so that you can associate tRNA reads in your contigs-db with taxonomy information.

Edit this file to update this information.