Microbial 'omics


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anvi-delete-collection [program]

Table of Contents

Remove a collection from a given profile database.

🔙 To the main page of anvi’o programs and artifacts.

Authors

A. Murat Eren (Meren)

Can consume

profile-db collection

Can provide

This program does not seem to provide any artifacts. Such programs usually print out some information for you to see or alter some anvi’o artifacts without producing any immediate outputs.

Usage

This program, as implied by the name, is used to delete a collection from a profile-db.

When you do this, you’ll lose the collection forever, as well as the bins within it. It is generally a good idea to export your binning effort into a collection-txt using anvi-export-collection before deleting it, just to be safe.

To list available collections in a database, call

anvi-delete-collection -p profile-db \ --list-collections

Then, you can easily delete a collection with the command

anvi-delete-collection -p profile-db \ -C collection

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.