Microbial 'omics

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anvi-experimental-organization [program]

Create an experimental clustering dendrogram..

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Table of Contents

Can provide


Can consume



This program can use an anvi’o clustering-configuration file to access various data sources in anvi’o databases to produce a hierarchical clustering dendrogram for items.

It is especially powerful when the user wishes to create a hierarchical clustering of contigs or gene clusters using only a specific set of samples. If you would like to see an example usage of this program see the article on combining metagenomics with metatranscriptomics.

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Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.