anvi-export-misc-data [program]
Export additional data or order tables in pan or profile databases for items or layers.
See program help menu or go back to the main page of anvi’o programs and artifacts.
Table of Contents
Can provide
misc-data-items-txt misc-data-layers-txt
misc-data-layer-orders-txt
misc-data-nucleotides-txt
misc-data-amino-acids-txt
Can consume
pan-db profile-db
contigs-db
misc-data-items
misc-data-layers
misc-data-layer-orders
misc-data-nucleotides
misc-data-amino-acids
Usage
This program lets you export miscellaneous data of your choosing into a text file, which can be imported into another anvi’o project using anvi-import-misc-data. You can export the same types of data that you can import with that function. These are also listed below.
To see what misc-data is available in your database, use anvi-show-misc-data.
If your misc-data is associated with a specific data group, you can provide that data group to this program with the -D
flag.
Data types you can export
From a pan-db or profile-db: items, layers, layer orders
From a pan-db or profile-db, you can export
- items data (misc-data-items) into a misc-data-items-txt.
anvi-export-misc-data -p profile-db \ --target-data-table items
- layers data (misc-data-layers) into a misc-data-layers-txt.
anvi-export-misc-data -p pan-db \ --target-data-table layers
- layer orders data (misc-data-layer-orders) into a misc-data-layer-orders-txt.
anvi-export-misc-data -p profile-db \ --target-data-table layer_orders
From a contigs-db: nucleotide and amino acid information
From a contigs-db, you can export
- nucleotide data (misc-data-nucleotides) into a misc-data-nucleotides-txt.
anvi-export-misc-data -c contigs-db --target-data-table nucleotides
- amino acid data (misc-data-amino-acids) into a misc-data-amino-acids-txt.
anvi-export-misc-data -c contigs-db --target-data-table amino_acids
Edit this file to update this information.
Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__
tag in this file to see an example.