Export additional data or order tables in pan or profile databases for items or layers.
This program lets you export miscellaneous data of your choosing into a text file, which can be imported into another anvi’o project using anvi-import-misc-data. You can export the same types of data that you can import with that function. These are also listed below.
To see what misc-data is available in your database, use anvi-show-misc-data.
If your misc-data is associated with a specific data group, you can provide that data group to this program with the
Data types you can export
From a pan-db or profile-db: items, layers, layer orders
anvi-export-misc-data -p profile-db \ --target-data-table items
anvi-export-misc-data -p pan-db \ --target-data-table layers
anvi-export-misc-data -p profile-db \ --target-data-table layer_orders
From a contigs-db: nucleotide and amino acid information
From a contigs-db, you can export
anvi-export-misc-data -c contigs-db --target-data-table nucleotides
anvi-export-misc-data -c contigs-db --target-data-table amino_acids
Edit this file to update this information.
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the
__resources__ tag in this file to see an example.