Microbial 'omics


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anvi-export-misc-data [program]

Table of Contents

Export additional data or order tables in pan or profile databases for items or layers.

🔙 To the main page of anvi’o programs and artifacts.

Authors

A. Murat Eren (Meren)

Can consume

pan-db profile-db contigs-db misc-data-items misc-data-layers misc-data-layer-orders misc-data-nucleotides misc-data-amino-acids

Can provide

misc-data-items-txt misc-data-layers-txt misc-data-layer-orders-txt misc-data-nucleotides-txt misc-data-amino-acids-txt

Usage

This program lets you export miscellaneous data of your choosing into a text file, which can be imported into another anvi’o project using anvi-import-misc-data. You can export the same types of data that you can import with that function. These are also listed below.

To see what misc-data is available in your database, use anvi-show-misc-data.

If your misc-data is associated with a specific data group, you can provide that data group to this program with the -D flag.

Data types you can export

From a pan-db or profile-db: items, layers, layer orders

From a pan-db or profile-db, you can export

anvi-export-misc-data -p profile-db \ --target-data-table items

anvi-export-misc-data -p pan-db \ --target-data-table layers

anvi-export-misc-data -p profile-db \ --target-data-table layer_orders

From a contigs-db: nucleotide and amino acid information

From a contigs-db, you can export

anvi-export-misc-data -c contigs-db --target-data-table nucleotides

anvi-export-misc-data -c contigs-db --target-data-table amino_acids

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.