Microbial 'omics


Brought to you by

anvi-export-splits-taxonomy [program]

Table of Contents

Export taxonomy for splits found in an anvi'o contigs database.

🔙 To the main page of anvi’o programs and artifacts.

Authors

A. Murat Eren (Meren)

Can consume

contigs-db

Can provide

splits-taxonomy-txt

Usage

This program exports the taxonomy hits for the splits contained in a contigs-db, outputting them in a splits-taxonomy-txt.

To do this, anvi’o examines all of the annotated genes within your splits and returns the taxon ID with the most genes associated with it. For example, a split with 3 genes identified as E. coli, 2 genes identified as Staphylococcus aureus, and 1 as Streptococcus pneumoniae would be annotated as E. coli.

To run this program, just provide a contigs-db:

anvi-export-splits-taxonomy -c contigs-db \ -o PATH/TO/splits-taxonomy-txt

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.