Microbial 'omics

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anvi-script-checkm-tree-to-interactive [program]

A helper script to convert CheckM trees into anvio interactive with taxonomy information.

See program help menu or go back to the main page of anvi’o programs and artifacts.

Table of Contents

Can provide


Can consume



A helper script to process CheckM tree output to generate files compatible with anvi-interactive.

An example use:

anvi-script-checkm-tree-to-interactive -t CheckM_concatenated.tree \ -o OUTPUT_PATH cd OUTPUT_PATH/ anvi-interactive -p PROFILE.db \ -t newick.tree \ -d view_data.txt \ --manual

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Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.