Microbial 'omics


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anvi-script-checkm-tree-to-interactive [program]

Table of Contents

A helper script to convert CheckM trees into anvio interactive with taxonomy information.

🔙 To the main page of anvi’o programs and artifacts.

Authors

Özcan C. Esen

Can consume

phylogeny

Can provide

interactive

Usage

A helper script to process CheckM tree output to generate files compatible with anvi-interactive.

An example use:

anvi-script-checkm-tree-to-interactive -t CheckM_concatenated.tree \ -o OUTPUT_PATH cd OUTPUT_PATH/ anvi-interactive -p PROFILE.db \ -t newick.tree \ -d view_data.txt \ --manual

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Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.