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anvi-script-checkm-tree-to-interactive [program]
Table of Contents
A helper script to convert CheckM trees into anvio interactive with taxonomy information.
See program help menu or go back to the main page of anvi’o programs and artifacts.
Can provide
Can consume
Usage
A helper script to process CheckM tree output to generate files compatible with anvi-interactive.
An example use:
anvi-script-checkm-tree-to-interactive -t CheckM_concatenated.tree \ -o OUTPUT_PATH cd OUTPUT_PATH/ anvi-interactive -p PROFILE.db \ -t newick.tree \ -d view_data.txt \ --manual
Edit this file to update this information.
Additional Resources
Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.