Microbial 'omics


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anvi-setup-ncbi-cogs [program]

Table of Contents

Download and setup NCBI's Clusters of Orthologous Groups database.

🔙 To the main page of anvi’o programs and artifacts.

Authors

A. Murat Eren (Meren)

Can consume

This program seems to know what its doing. It needs no input material from its user. Good program.

Can provide

cogs-data

Usage

This program downloads and organizes a local copy of the data from NCBI’s COGs database for use in function annotation. This program generates a cogs-data artifact, which is required to run the program anvi-run-ncbi-cogs.

Set up COGs data

anvi-setup-ncbi-cogs --just-do-it

If you already have a cogs-data artifact and are trying to redownload this data, run

anvi-setup-ncbi-cogs --reset

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.