anvi-setup-ncbi-cogs [program]
Download and setup NCBI's Clusters of Orthologous Groups database.
See program help menu or go back to the main page of anvi’o programs and artifacts.
Table of Contents
Can provide
Can consume
Usage
This program downloads and organizes a local copy of the data from NCBI’s COGs database for use in function annotation. This program generates a cogs-data artifact, which is required to run the program anvi-run-ncbi-cogs.
Set up COGs data
anvi-setup-ncbi-cogs --just-do-it
If you already have a cogs-data artifact and are trying to redownload this data, run
anvi-setup-ncbi-cogs --reset
Edit this file to update this information.
Additional Resources
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