Microbial 'omics


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anvi-show-collections-and-bins [program]

Table of Contents

A script to display collections stored in an anvi'o profile or pan database.

🔙 To the main page of anvi’o programs and artifacts.

Authors

A. Murat Eren (Meren)

Can consume

pan-db profile-db

Can provide

This program does not seem to provide any artifacts. Such programs usually print out some information for you to see or alter some anvi’o artifacts without producing any immediate outputs.

Usage

This program tells you about the collections within a profile-db or pan-db.

Just run it like so

anvi-show-collections-and-bins -p profile-db

and Anvi’o will output to your console the following information for each of the collections in the database:

  • The name and ID of the collection
  • The number of bins within the collection, and each of their names
  • The number of splits contained within those bins

Edit this file to update this information.

Additional Resources

Are you aware of resources that may help users better understand the utility of this program? Please feel free to edit this file on GitHub. If you are not sure how to do that, find the __resources__ tag in this file to see an example.